extract_ladder_summary: Extract ladder summary

In trace: Tandem Repeat Analysis by Capillary Electrophoresis

Extract ladder summary

Description

Extract a table summarizing the ladder models

Usage

extract_ladder_summary(fragments_trace_list, sort = FALSE)

Arguments

fragments_trace_list	a list of fragments trace objects
sort	A logical statement for if the samples should be ordered by average ladder R-squared.

Details

The ladder peaks are assigned using a custom algorithm that maximizes the fit of detected ladder peaks and given base-pair sizes. This function summarizes the R-squared values of these individual correlations.

Value

a dataframe of ladder quality information

Examples

  fsa_list <- lapply(cell_line_fsa_list, function(x) x$clone())

  find_ladders(fsa_list, show_progress_bar = FALSE)

  extract_ladder_summary(fsa_list, sort = TRUE)

trace documentation built on April 4, 2025, 1:50 a.m.