generate_trace_template: Generate a Quarto file that has the instability pipeline...

In trace: Tandem Repeat Analysis by Capillary Electrophoresis

Generate a Quarto file that has the instability pipeline preset

Description

Generate a Quarto file that has the instability pipeline preset

Usage

generate_trace_template(
  file_name = NULL,
  correction = "batch",
  samples_grouped = TRUE
)

Arguments

file_name	Name of file to create
correction	select either "none", "batch" or "repeat" to indicate if the functionality for correcting repeat size using size standards across batches be included in the pipeline. See add_metadata() & call_repeats() for more info.
samples_grouped	Indicates if the functionality for grouping samples for metrics calculations should be included in the pipeline. See add_metadata() & assign_index_peaks() for more info.

Value

A Quarto template file for repeat instability analysis

Examples

if (interactive()) {
   generate_trace_template("test")
}

trace documentation built on April 4, 2025, 1:50 a.m.