View source: R/extract_functions.R
extract_fragments | R Documentation |
Extracts peak data from each sample in a list of fragments.
extract_fragments(fragments_list)
fragments_list |
A list of fragments_repeats objects containing fragment data. |
A dataframe containing peak data for each sample
gm_raw <- trace::example_data
metadata <- trace::metadata
test_fragments <- peak_table_to_fragments(gm_raw,
data_format = "genemapper5",
dye_channel = "B",
min_size_bp = 400
)
add_metadata(
fragments_list = test_fragments,
metadata_data.frame = metadata
)
find_alleles(
fragments_list = test_fragments
)
call_repeats(
fragments_list = test_fragments,
assay_size_without_repeat = 87,
repeat_size = 3
)
extract_alleles(test_fragments)
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