trace-package: trace: Tandem Repeat Analysis by Capillary Electrophoresis

In trace: Tandem Repeat Analysis by Capillary Electrophoresis

trace: Tandem Repeat Analysis by Capillary Electrophoresis

Description

A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1186/1752-0509-4-29")}).

Author(s)

Maintainer: Zachariah McLean [e-mail] (ORCID) [copyright holder]

Authors:

• Kevin Correia

Other contributors:

• Andrew Jiang [contributor]

See Also

Useful links:

• https://zachariahmclean.github.io/trace/

trace documentation built on April 4, 2025, 1:50 a.m.