plot_data_channels: plot_data_channels

In trace: Tandem Repeat Analysis by Capillary Electrophoresis

plot_data_channels

Description

Plot the raw data from the fsa file

Usage

plot_data_channels(fragments_list, sample_subset = NULL, n_facet_col = 1)

Arguments

fragments_list	A list of fragments_trace objects.
sample_subset	A character vector of unique ids for a subset of samples to plot
n_facet_col	A numeric value indicating the number of columns for faceting in the plot.

Details

A plot of the raw data channels in the fsa file.

These plots are made using base R plotting. Sometimes these fail to render in the viewing panes of IDEs (eg you get the error 'Error in plot.new(): figure margins too large)'. If this happens, try saving the plot as a pdf using traditional approaches (see grDevices::pdf). To get it to render in the IDE pane, trying matching n_facet_col to the number of samples you're attempting to plot, or using sample_subset to limit it to a single sample.

Value

a plot of the raw data channels

Examples

plot_data_channels(cell_line_fsa_list[1])

trace documentation built on April 4, 2025, 1:50 a.m.