plot_ladders: Plot ladder

In trace: Tandem Repeat Analysis by Capillary Electrophoresis

Plot ladder

Description

Plot the ladder signal

Usage

plot_ladders(
  fragments_trace_list,
  n_facet_col = 1,
  sample_subset = NULL,
  xlim = NULL,
  ylim = NULL
)

Arguments

fragments_trace_list	A list of fragments_trace objects containing fragment data.
n_facet_col	A numeric value indicating the number of columns for faceting in the plot.
sample_subset	A character vector of unique ids for a subset of samples to plot
xlim	the x limits of the plot. A numeric vector of length two.
ylim	the y limits of the plot. A numeric vector of length two.

Value

a plot of ladders

Examples

fsa_list <- lapply(cell_line_fsa_list[1], function(x) x$clone())

find_ladders(fsa_list, show_progress_bar = FALSE)

# Manually inspect the ladders
plot_ladders(fsa_list[1])

trace documentation built on April 4, 2025, 1:50 a.m.