repeat_table_to_repeats: Convert Repeat Table to Repeats Fragments

In trace: Tandem Repeat Analysis by Capillary Electrophoresis

Convert Repeat Table to Repeats Fragments

Description

This function converts a repeat table data frame into a list of fragments_repeats. class.

Usage

repeat_table_to_repeats(df, unique_id, repeat_col, frequency_col)

Arguments

df	A data frame containing the repeat data.
unique_id	A character string indicating the column name for unique identifiers.
repeat_col	A character string indicating the column name for the repeats.
frequency_col	A character string indicating the column name for the repeat frequencies.

Details

This function takes a repeat table data frame and converts it into a list of repeats fragments. The function allows specifying column names for repeats, frequencies, and unique identifiers.

Value

A list of fragments_repeats objects.

Examples

repeat_table <- trace::example_data_repeat_table
test_fragments <- repeat_table_to_repeats(
  repeat_table,
  repeat_col = "repeats",
  frequency_col = "height",
  unique_id = "unique_id"
)

trace documentation built on April 4, 2025, 1:50 a.m.