Man pages for trace
Tandem Repeat Analysis by Capillary Electrophoresis
| add_metadata | Add Metadata to Fragments List |
| assign_index_peaks | Assign index peaks |
| calculate_instability_metrics | Calculate Repeat Instability Metrics |
| call_repeats | Call Repeats for Fragments |
| cell_line_fsa_list | A list of fsa files |
| example_data | example_data |
| example_data_repeat_table | example_data_repeat_table |
| extract_alleles | Extract Modal Peaks |
| extract_fragments | Extract All Fragments |
| extract_ladder_summary | Extract ladder summary |
| extract_repeat_correction_summary | Extract repeat correction summary |
| extract_trace_table | Extract traces |
| find_alleles | Find Alleles |
| find_fragments | Find fragment peaks |
| find_ladders | Ladder and bp sizing |
| fix_ladders_interactive | Fix ladders interactively |
| fix_ladders_manual | Fix ladders manually |
| fragments | fragments object |
| fragments_repeats | fragments_repeats object |
| fragments_trace | fragments_trace object |
| generate_trace_template | Generate a Quarto file that has the instability pipeline... |
| metadata | metadata |
| peak_table_to_fragments | Convert Peak Table to Fragments_repeats class |
| plot_batch_correction_samples | Plot correction samples |
| plot_data_channels | plot_data_channels |
| plot_fragments | Plot Peak Data |
| plot_ladders | Plot ladder |
| plot_repeat_correction_model | Plot Repeat Correction Model |
| plot_traces | Plot sample traces |
| read_fsa | Read fsa file |
| remove_fragments | Remove Samples from List |
| repeat_table_to_repeats | Convert Repeat Table to Repeats Fragments |
| trace-package | trace: Tandem Repeat Analysis by Capillary Electrophoresis |
