system_plot_cohorts: Plot Estimation Results

Description Usage Arguments Details Value See Also

View source: R/ubiquity.r

Description

Generates figures for each cohort/output for a given set of parameter estimates.

Usage

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system_plot_cohorts(
  erp,
  plot_opts = c(),
  cfg,
  analysis_name = "analysis",
  archive_results = TRUE,
  prefix = NULL
)

Arguments

erp

output from system_simulate_estimation_results

plot_opts

list controling how predictions and data are overlaid

cfg

ubiquity system object

analysis_name

string containing the name of the analysis

archive_results

boolean variable to control whether results will be archived

prefix

depreciated input mapped to analysis_name

Details

The general format for a plot option for a given output (OUTPUT) is:

plot_opts$outputs$OUTPUTt$option = value

The following options are:

It is also possible to control the height and width of the time course tc and observed vs predicted op file by specifying the following in the default units of ggsave.

To control the figures that are generated you can set the purpose to either "print", "present" (default) or "shiny".

plot_opts$purpose = "present"

Value

List of plot outputs containing two elements timecourse and obs_pred, for the time course of and observed vs predicted, respectively. Both of these fields contain three elements for a given output. For example, say there is an output named PK the both the timecourse and obs_pred elements will have a field named PK containing a ggplot object and two fields PK_png and PK_pdf containing the paths to the files containing that figure in the respective formats.

See Also

The estimation vignette (vignette("Estimation", package = "ubiquity"))


ubiquity documentation built on Sept. 5, 2021, 5:15 p.m.