Generates figures for each cohort/output for a given set of parameter estimates.
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list controling how predictions and data are overlaid
ubiquity system object
string containing the name of the analysis
boolean variable to control whether results will be archived
depreciated input mapped to analysis_name
The general format for a plot option for a given output (
plot_opts$outputs$OUTPUTt$option = value
The following options are:
= "linear" or "log"
= c(min, max)
It is also possible to control the
width of the time course
tc and observed vs predicted
op file by specifying the following in the default units of
plot_opts$tc$width = 10
plot_opts$tc$height = 5.5
plot_opts$op$width = 10
plot_opts$op$height = 8.0
To control the figures that are generated you can set the purpose to either "print", "present" (default) or "shiny".
plot_opts$purpose = "present"
List of plot outputs containing two elements
obs_pred, for the time course of and observed vs predicted,
respectively. Both of these fields contain three elements for a given
output. For example, say there is an output named
PK the both the
obs_pred elements will have a field named
PK containing a ggplot object
and two fields
PK_pdf containing the paths to the
files containing that figure in the respective formats.
The estimation vignette (
vignette("Estimation", package = "ubiquity"))
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