Files in ubiquity

PKPD, PBPK, and Systems Pharmacology Modeling Tools

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/ubiquity.r

inst/CITATION

inst/doc/NCA.R

inst/doc/Reporting.html

inst/doc/Deployment.Rmd

inst/doc/Simulation.html

inst/doc/Estimation.html

inst/doc/Language.R

inst/doc/Deployment.html

inst/doc/Titration.Rmd

inst/doc/Language.html

inst/doc/Simulation.Rmd

inst/doc/NCA.html

inst/doc/Deployment.R inst/doc/Estimation.R inst/doc/Reporting.R inst/doc/Language.Rmd

inst/doc/Titration.html

inst/doc/Titration.R inst/doc/Estimation.Rmd inst/doc/NCA.Rmd inst/doc/Simulation.R inst/doc/Reporting.Rmd

inst/ubinc/perl/build_system.pl

inst/ubinc/images/report_image.png

inst/ubinc/templates/r_odes.c

inst/ubinc/templates/r_components.R

inst/ubinc/templates/jl_components.jl

inst/ubinc/templates/ubiquity_app.R

inst/ubinc/templates/report.pptx

inst/ubinc/templates/adapt_system.for

inst/ubinc/templates/system.svg

inst/ubinc/templates/monolix.txt

inst/ubinc/templates/report.docx

inst/ubinc/templates/mrgsolve.cpp

inst/ubinc/templates/ubiquity_server.R

inst/ubinc/templates/jl_de.jl

inst/ubinc/templates/r_simulation_driver.R

inst/ubinc/templates/nonmem.ctl

inst/ubinc/templates/r_system_report.Rmd

inst/ubinc/templates/report.yaml

inst/ubinc/templates/r_nlmixr.R inst/ubinc/templates/ubiquity_ui_custom.R inst/ubinc/templates/r_test_rmd.R inst/ubinc/templates/ubiquity_app_custom.R

inst/ubinc/templates/adapt_parameters.prm

inst/ubinc/templates/ubiquity_ui.R inst/ubinc/templates/system_report.R inst/ubinc/templates/r_nca.R

inst/ubinc/templates/system_template.txt

inst/ubinc/templates/r_gui_save.R inst/ubinc/templates/ubiquity_server_custom.R inst/ubinc/templates/r_analysis_estimation.R

inst/ubinc/csv/pk_all_sd.csv

inst/ubinc/csv/nm_data.csv

inst/ubinc/csv/pk_all_md.csv

inst/ubinc/csv/pk_sparse_sd.csv

inst/ubinc/csv/pm_data.csv

inst/ubinc/csv/mab_pk_subjects.csv

inst/ubinc/scripts/analysis_repeat_dosing.r inst/ubinc/scripts/analysis_parent_metabolite_nm_data.r inst/ubinc/scripts/analysis_visit_infusion_dosing.r inst/ubinc/scripts/analysis_nca_md.R inst/ubinc/scripts/analysis_parent_metabolite.r inst/ubinc/scripts/analysis_repeat_infusion.r inst/ubinc/scripts/analysis_single.r inst/ubinc/scripts/analysis_nca_sd.R inst/ubinc/scripts/analysis_multiple_file.r inst/ubinc/scripts/analysis_visit_dosing_titration_stochastic.r inst/ubinc/scripts/workshop_test.R inst/ubinc/scripts/analysis_multiple.r inst/ubinc/scripts/analysis_state_reset.r inst/ubinc/scripts/analysis_parent_metabolite_global.r inst/ubinc/scripts/analysis_parent.r inst/ubinc/scripts/ubiquity_fcns.R inst/ubinc/scripts/make_report_PowerPoint.R inst/ubinc/scripts/nca_generate_data.R inst/ubinc/scripts/make_report_Word.R inst/ubinc/scripts/analysis_visit_dosing_titration.r inst/ubinc/scripts/analysis_nca_sparse.R

inst/ubinc/systems/system-pwc.txt

inst/ubinc/systems/system-sets.txt

inst/ubinc/systems/system-one_cmt_micro.txt

inst/ubinc/systems/system-pbpk_template.txt

inst/ubinc/systems/system-two_cmt_cl.txt

inst/ubinc/systems/system-one_cmt_cl.txt

inst/ubinc/systems/system-two_cmt_micro.txt

inst/ubinc/systems/system-tmdd.txt

inst/ubinc/systems/system-glp_study.txt

inst/ubinc/systems/system-iiv.txt

inst/ubinc/systems/system-adapt.txt

inst/ubinc/systems/system-testing.txt

inst/ubinc/systems/system-pbpk.txt

inst/ubinc/systems/system-tumor.txt

inst/ubinc/systems/system-mab_pk.txt

inst/ubinc/systems/system-target.txt

build/vignette.rds

build/partial.rdb

vignettes/ShinyApp-ss-Bolus.png

vignettes/Reporting.RData

vignettes/Estimation-parent-op.png

vignettes/Deployment.Rmd

vignettes/ShinyApp-ss-Infusion.png

vignettes/ShinyApp-ss-Pop_timecourse.png

vignettes/Estimation-parent-tc.png

vignettes/nca_reporting-sd.png

vignettes/covariates.png

vignettes/nca_reporting-md.png

vignettes/Titration.Rmd

vignettes/system-estimation_example.png

vignettes/ShinyApp-ss-Save.png

vignettes/Simulation_som_multiple.RData

vignettes/Simulation.Rmd

vignettes/system-tmdd.png

vignettes/system-paper-mathematical_sets.png

vignettes/Language.Rmd

vignettes/system-paper-parameter_sets.png

vignettes/myOrg.yaml

vignettes/Titration_presim.RData

vignettes/NCA_presim.RData

vignettes/Simulation_cfg_orig.RData

vignettes/ShinyApp-ss-Initialization.png

vignettes/Estimation.Rmd

vignettes/dosing_bolus.png

vignettes/nca_reporting-sparse.png

vignettes/ShinyApp-ss-IIV.png

vignettes/NCA.Rmd

vignettes/Simulation_som_single.RData

vignettes/Reporting.Rmd man/system_fetch_iiv.Rd man/system_new.Rd man/AUC_Bailers_method.Rd man/system_fetch_nca.Rd man/gg_log10_yaxis.Rd man/system_set_tt_cond.Rd man/system_log_init.Rd man/system_set_rate.Rd man/var2string.Rd man/system_simulate_estimation_results.Rd man/calculate_halflife.Rd man/gg_axis.Rd man/run_simulation_ubiquity.Rd man/system_clear_cohorts.Rd man/fetch_full_parameters.Rd man/workshop_fetch.Rd man/system_select_set.Rd man/system_rpt_template_details.Rd man/tic.Rd man/system_set_tt_rate.Rd man/system_define_cohorts_nm.Rd man/calculate_objective.Rd man/system_ts_to_simtime.Rd man/system_nm_check_ds.Rd man/system_set_rpt_officer_object.Rd man/system_od_general.Rd man/run_simulation_titrate.Rd man/system_estimate_parameters.Rd man/system_req.Rd man/system_set_option.Rd man/find_bracketed_arguments.Rd man/system_glp_scenario.Rd man/calculate_variance.Rd man/system_view.Rd man/system_rpt_add_slide.Rd man/system_nca_parameters_meta.Rd man/generate_subject.Rd man/system_set_bolus.Rd man/generate_report.Rd man/system_new_tt_rule.Rd man/som_to_df.Rd man/logspace.Rd man/system_set_rpt_onbrand_object.Rd man/system_check_steady_state.Rd man/solution_statistics.Rd man/system_nca_summary.Rd man/var2string_gen.Rd man/system_fetch_guess.Rd man/system_check_requirements.Rd man/system_fetch_parameters.Rd man/system_fetch_template.Rd man/toc.Rd man/compare_estimate.Rd man/build_system.Rd man/pad_string.Rd man/vp.Rd man/sample_around.Rd man/generate_parameter.Rd man/system_set_guess.Rd man/system_rpt_read_template.Rd man/estimate_parameters.Rd man/calculate_objective_pso.Rd man/system_define_cohort.Rd man/system_rpt_save_report.Rd man/system_log_debug_save.Rd man/parse_patterns.Rd man/system_fetch_TSsys.Rd man/make_forcing_function.Rd man/timecourse_stats.Rd man/ubiquity_name_check.Rd man/prepare_figure.Rd man/system_set_iiv.Rd man/system_fetch_set.Rd man/system_fetch_rpt_onbrand_object.Rd man/apply_sub_file_COV.Rd man/system_glp_init.Rd man/GUI_log_entry.Rd man/gg_log10_xaxis.Rd man/system_nca_run.Rd man/system_set_parameter.Rd man/nm_select_records.Rd man/system_rpt_add_doc_content.Rd man/system_log_entry.Rd man/system_new_list.Rd man/system_fetch_nca_columns.Rd man/system_set_tt_bolus.Rd man/system_zero_inputs.Rd man/system_set_covariate.Rd man/check_steady_state.Rd man/simulate_subjects.Rd man/system_rpt_estimation.Rd man/linspace.Rd man/system_fetch_rpt_officer_object.Rd man/calculate_objective_ga.Rd man/archive_estimation.Rd man/system_load_data.Rd man/system_rpt_nca.Rd man/system_plot_cohorts.Rd

man/figures/logo.png

ubiquity documentation built on Nov. 2, 2023, 6:26 p.m.