system_select_set: Selecting Parameter Sets

Description Usage Arguments Value Examples

View source: R/ubiquity.r

Description

The system file can contain multiple parameterizations using the <PSET:?:?>? notation. This function provides the means for switching between these parameterizations, and (optionally) specifying a subset of parameters estimated when performing parameter estimation.

Usage

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system_select_set(cfg, set_name = "default", parameter_names = NULL)

Arguments

cfg

ubiquity system object

set_name

string containing the name of the parameter set

parameter_names

list of parameter names to be estimated

Value

Ubiquity system object with the specified parameter set active

Examples

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# Creating a system file from the mab_pk example
fr = system_new(file_name        = "system.txt", 
                system_file      = "mab_pk", 
                overwrite        = TRUE, 
                output_directory = tempdir())

# Building the system 
cfg = build_system(system_file  = file.path(tempdir(), "system.txt"),
      output_directory          = file.path(tempdir(), "output"),
      temporary_directory       = tempdir())

# Selecting the default parameter set
cfg = system_select_set(cfg, "default")

ubiquity documentation built on Sept. 5, 2021, 5:15 p.m.