system_select_set: Selecting Parameter Sets

In ubiquity: PKPD, PBPK, and Systems Pharmacology Modeling Tools

Selecting Parameter Sets

Description

The system file can contain multiple parameterizations using the <PSET:?:?>? notation. This function provides the means for switching between these parameterizations, and (optionally) specifying a subset of parameters estimated when performing parameter estimation.

Usage

system_select_set(cfg, set_name = "default", parameter_names = NULL)

Arguments

cfg	ubiquity system object
set_name	string containing the name of the parameter set
parameter_names	list of parameter names to be estimated

Value

Ubiquity system object with the specified parameter set active

Examples

# Creating a system file from the mab_pk example
fr = system_new(file_name        = "system.txt", 
                system_file      = "mab_pk", 
                overwrite        = TRUE, 
                output_directory = tempdir())

# Building the system 
cfg = build_system(system_file  = file.path(tempdir(), "system.txt"),
      output_directory          = file.path(tempdir(), "output"),
      temporary_directory       = tempdir())

# Selecting the default parameter set
cfg = system_select_set(cfg, "default")

ubiquity documentation built on Nov. 2, 2023, 6:26 p.m.