Files in updog
Flexible Genotyping for Polyploids
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/pp.R
R/oracle.R
R/data.R
R/multidog.R
R/updog.R
R/ashdog.R
R/plot_geno.R
R/rflexdog.R
src/Makevars.win
src/Makevars
src/flexdog.cpp
src/RcppExports.cpp
src/oracle.cpp
src/util_funs.cpp
src/gradients.cpp
src/em.cpp
src/betabinom.cpp
src/objective.cpp
src/mupdog.h
inst/CITATION
inst/include/updog.h
inst/include/updog_RcppExports.h
inst/doc/oracle_calculations.Rmd
inst/doc/smells_like_updog.Rmd
inst/doc/simulate_ngs.Rmd
inst/doc/simulate_ngs.R
inst/doc/simulate_ngs.html
inst/doc/multidog.R
inst/doc/multidog.html
inst/doc/smells_like_updog.R
inst/doc/oracle_calculations.html
inst/doc/multidog.Rmd
inst/doc/smells_like_updog.html
inst/doc/oracle_calculations.R
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/testdat.RData
tests/testthat/test_wikmat.R
tests/testthat/test_gradients.R
tests/testthat/test_dbetabinom.R
tests/testthat/test_rflexdog.R
tests/testthat/test_objectives.R
tests/testthat/test_oracle.R
tests/testthat/cvx_prob.RDS
tests/testthat/out_err.RData
tests/testthat/test_flexdog.R
tests/testthat/test_f1_genotyping.R
tests/testthat/test_utils.R
vignettes/oracle_calculations.Rmd
vignettes/smells_like_updog.Rmd
vignettes/simulate_ngs.Rmd
vignettes/multidog.Rmd
data/uitdewilligen.RData
data/snpdat.RData
man/multidog.Rd
man/oracle_mis_vec.Rd
man/oracle_mis_vec_from_joint.Rd
man/oracle_joint.Rd
man/plot_geno.Rd
man/rgeno.Rd
man/oracle_mis_from_joint.Rd
man/get_q_array.Rd
man/plot.multidog.Rd
man/snpdat.Rd
man/is.flexdog.Rd
man/flexdog_full.Rd
man/updog-package.Rd
man/log_sum_exp.Rd
man/wem.Rd
man/format_multidog.Rd
man/oracle_mis.Rd
man/log_sum_exp_2.Rd
man/filter_snp.Rd
man/rflexdog.Rd
man/oracle_plot.Rd
man/betabinom.Rd
man/is.multidog.Rd
man/plot.flexdog.Rd
man/uitdewilligen.Rd
man/oracle_cor_from_joint.Rd
man/flexdog.Rd
man/oracle_cor.Rd
man/figures/logo.png
