resAtomType2AtomClass: Convert Residue-AtomType to AtomType Class

In vanddraabe: Identification and Statistical Analysis of Conserved Waters Near Proteins

Description

Converts the residue-AtomType to AtomType Class.

Usage

resAtomType2AtomClass(resAT)

Arguments

resAT

residue and AtomType; e.g., "LYS NZ"

Details

See examples...

Value

A string with the AtomType's class:

• Nitrogen

• Nitrogen (+)

• Oxygen

• Oxygen (-)

• Carbon

• Sulfur

Author(s)

Emilio Xavier Esposito [e-mail]

See Also

Other utilities: ConservationSet, DetermineChainsOfInterest, ExtractFileTimeStamp, ExtractPDBids, FileTimeStamp, HasXWaters, Nearby, ProtHetWatIndices, RescaleValues, RetainChainsOfInterest, ReturnPDBfullPath, StandardizeAsparticAcidNames, StandardizeCysteineNames, StandardizeGlutamicAcidNames, StandardizeHistidineNames, StandardizeLysineNames, TimeSpan, UniqueAtomHashes, aaStandardizeNames, getAtomTypeCounts, getResTypeCounts, res2xyz, write.basic.pdb, write.conservedWaters.pdb

Examples

  resAtomType2AtomClass(resAT="LYS NZ")
  # [1] "Nitrogen (+)"
  resAtomType2AtomClass(resAT="GLU N")
  # [1] "Nitrogen"
  resAtomType2AtomClass(resAT="VAL O")
  # [1] "Oxygen"
  resAtomType2AtomClass(resAT="ASP OD2")
  # [1] "Oxygen (-)"
  resAtomType2AtomClass(resAT="GLN CA")
  # [1] "Carbon"
  resAtomType2AtomClass(resAT="CYS SG")
  # [1] "Sulfur"

vanddraabe documentation built on June 8, 2019, 1:03 a.m.