allenEx5BrainExtraction | R Documentation |
Perform brain extraction of Allen's E13.5 and E15.5 mouse embroyonic data.
allenEx5BrainExtraction(
image,
view = c("coronal", "sagittal"),
whichAxis = 3,
antsxnetCacheDirectory = NULL,
verbose = FALSE
)
image |
input image |
view |
Two trained networks are available: "coronal" or "sagittal". |
whichAxis |
If 3-D image, which_axis specifies the direction of the "view". |
antsxnetCacheDirectory |
destination directory for storing the downloaded
template and model weights. Since these can be resused, if
|
verbose |
print progress. |
segmentation and probability images
Tustison NJ
## Not run:
library( ANTsRNet )
library( keras )
image <- antsImageRead( "image.nii.gz" )
output <- allenEx5BrainExtraction( image )
## End(Not run)
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