allenHistologyBrainMask: Determine brain foreground of Allen's mouse embroyonic data.
In ANTsX/ANTsRNet: Neural Networks for Medical Image Processing

allenHistologyBrainMask

R Documentation

Determine brain foreground of Allen's mouse embroyonic data.

Description

Determine brain foreground of Allen's mouse embroyonic data.

Usage

allenHistologyBrainMask(
  image,
  whichAxis = 3,
  antsxnetCacheDirectory = NULL,
  verbose = FALSE
)

Arguments

`image`	input image
`whichAxis`	If 3-D image, which_axis specifies the direction of the slice.
`antsxnetCacheDirectory`	destination directory for storing the downloaded template and model weights. Since these can be resused, if `is.null(antsxnetCacheDirectory)`, these data will be downloaded to the subdirectory ~/.keras/ANTsXNet/.
`verbose`	print progress.

Value

segmentation and probability images

Author(s)

Tustison NJ

Examples

## Not run: 
library( ANTsRNet )
library( keras )

image <- antsImageRead( "image.nii.gz" )
output <- allenHistologyBrainMask( image )

## End(Not run)

ANTsX/ANTsRNet documentation built on April 23, 2024, 1:24 p.m.