add_demux_seurat: Add cellhash demultiplexing results using Seurat::HTODemux()

In AlexsLemonade/scpcaTools: Single cell data tools for ScPCA

Add cellhash demultiplexing results using Seurat::HTODemux()

Description

Add cellhash demultiplexing results using Seurat::HTODemux()

Usage

add_demux_seurat(sce, altexp_id = "cellhash", ...)

Arguments

sce	SingleCellExperiment object.
altexp_id	The name of the alternative experiment that contains the cellhash data. Default value: "cellhash"
...	Other arguments to pass to Seurat::HTODemux

Value

SingleCellExperiment with a 'colData' column 'htodemux_id' containing the confident demultiplexing calls. Other results from 'Seurat::HTODemuxs()' are included in the 'rowData' for the cellhash 'altExp', with the prefix 'HTODemux_'. See [Seurat::HTODemux()] for the contents of these fields.

Examples

## Not run: 
# add cell calls from Seurat::HTODemux()
add_demux_seurat(sce = sce)

## End(Not run)

AlexsLemonade/scpcaTools documentation built on July 12, 2024, 8:34 a.m.