add_gene_symbols: Add Gene symbols to a SingleCellExperiment from a GTF file
In AlexsLemonade/scpcaTools: Single cell data tools for ScPCA
View source: R/add_gene_symbols.R
add_gene_symbols R Documentation
Add Gene symbols to a SingleCellExperiment from a GTF file
Description
Add Gene symbols to a SingleCellExperiment from a GTF file
Usage
add_gene_symbols(sce, gene_info)
Arguments
sce
SingleCellExperiment object
gene_info
A GRanges object or data frame with annotation information corresponding to the SCE.
Most importantly should contain a 'gene_id' column that matches the row names of the SCE
and a 'gene_name' column with the gene symbols should be included.
Value
SingleCellExperiment with gene_symbols added (or replaced) to the rowData table.
AlexsLemonade/scpcaTools documentation built on July 12, 2024, 8:34 a.m.
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View source: R/add_gene_symbols.R
| add_gene_symbols | R Documentation |
Add Gene symbols to a SingleCellExperiment from a GTF file
Description
Add Gene symbols to a SingleCellExperiment from a GTF file
Usage
add_gene_symbols(sce, gene_info)
Arguments
sce |
SingleCellExperiment object |
gene_info |
A GRanges object or data frame with annotation information corresponding to the SCE. Most importantly should contain a 'gene_id' column that matches the row names of the SCE and a 'gene_name' column with the gene symbols should be included. |
Value
SingleCellExperiment with gene_symbols added (or replaced) to the rowData table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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