merge_altexp: Add an alternative experiment to a SingleCellExperiment by...
In AlexsLemonade/scpcaTools: Single cell data tools for ScPCA
merge_altexp R Documentation
Add an alternative experiment to a SingleCellExperiment by "left join"
Description
This function takes SingleCellExperiment (SCE) and adds an Alternative Experiment (AltExp) to it.
If the two experiments do not have the same set of cells, this will use the first
SCE as the base set, adding columns (cells) to the AltExp so that the matrices match on that dimension.
Columns (cells) that are not found in the base experiment are discarded.
Note that this function is not related to merging multiple SCE objects.
Usage
merge_altexp(sce, alt_exp, alt_name)
Arguments
sce
a SingleCellExperiment object
alt_exp
a second SummarizedExperiment to add as an alternative experiment
Most likely, this will also be a SingleCellExperiment, but it does not have to be.
The AltExp in the output will be a SingleCellExperiment
alt_name
The name to use for the alternative experiment slot
Value
A SingleCellExperiment with an AltExp slot containing another SingleCellExperiment.
AlexsLemonade/scpcaTools documentation built on July 12, 2024, 8:34 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| merge_altexp | R Documentation |
Add an alternative experiment to a SingleCellExperiment by "left join"
Description
This function takes SingleCellExperiment (SCE) and adds an Alternative Experiment (AltExp) to it. If the two experiments do not have the same set of cells, this will use the first SCE as the base set, adding columns (cells) to the AltExp so that the matrices match on that dimension. Columns (cells) that are not found in the base experiment are discarded. Note that this function is not related to merging multiple SCE objects.
Usage
merge_altexp(sce, alt_exp, alt_name)
Arguments
sce |
a SingleCellExperiment object |
alt_exp |
a second SummarizedExperiment to add as an alternative experiment Most likely, this will also be a SingleCellExperiment, but it does not have to be. The AltExp in the output will be a SingleCellExperiment |
alt_name |
The name to use for the alternative experiment slot |
Value
A SingleCellExperiment with an AltExp slot containing another SingleCellExperiment.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.