sce_to_seurat: Convert SingleCellExperiment object to Seurat object
In AlexsLemonade/scpcaTools: Single cell data tools for ScPCA
View source: R/sce_to_seurat.R
sce_to_seurat R Documentation
Convert SingleCellExperiment object to Seurat object
Description
Convert SingleCellExperiment object to Seurat object
Usage
sce_to_seurat(sce, assay_name = "counts")
Arguments
sce
SingleCellExperiment object
assay_name
The assay name (default "counts") to include in
the Seurat object. This name will be applied as the assay name in
the Seurat object. If the default "counts" assay is used, then the
assay name will instead be "RNA," consistent with Seurat defaults.
Value
Seurat object
Examples
## Not run:
sce_to_seurat(sce = sce_object)
## End(Not run)
AlexsLemonade/scpcaTools documentation built on July 12, 2024, 8:34 a.m.
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View source: R/sce_to_seurat.R
| sce_to_seurat | R Documentation |
Convert SingleCellExperiment object to Seurat object
Description
Convert SingleCellExperiment object to Seurat object
Usage
sce_to_seurat(sce, assay_name = "counts")
Arguments
sce |
SingleCellExperiment object |
assay_name |
The assay name (default "counts") to include in the Seurat object. This name will be applied as the assay name in the Seurat object. If the default "counts" assay is used, then the assay name will instead be "RNA," consistent with Seurat defaults. |
Value
Seurat object
Examples
## Not run:
sce_to_seurat(sce = sce_object)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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