integrate_fastmnn: Integrate a list of SingleCellExperiment (SCE) objects using...

In AlexsLemonade/scpcaTools: Single cell data tools for ScPCA

Integrate a list of SingleCellExperiment (SCE) objects using the fastMNN approach from the 'batchelor' package. Source: http://www.bioconductor.org/packages/release/bioc/html/batchelor.html

Description

Integrate a list of SingleCellExperiment (SCE) objects using the fastMNN approach from the 'batchelor' package. Source: http://www.bioconductor.org/packages/release/bioc/html/batchelor.html

Usage

integrate_fastmnn(merged_sce, batch_column, ...)

Arguments

merged_sce	A merged SCE object as prepared by 'scpcaTools::merge_sce_list()'.
batch_column	The variable in 'merged_sce' indicating batches.
...	Additional arguments to pass into 'batchelor::fastMNN()'

Value

An integrated SCE object produced by 'fastMNN'

AlexsLemonade/scpcaTools documentation built on July 12, 2024, 8:34 a.m.