balance_fragment_clusters: Downsample fragments within cluster sets to match the sample...
In AllenInstitute/lowcat: Low Coverage Accessibility and Transcriptomics
Description
Usage
Arguments
Value
View source: R/io_and_formats.R
Description
Downsample fragments within cluster sets to match the sample with the lowest number of fragments
Usage
1
balance_fragment_clusters(fragment_list, clusters)
Arguments
fragment_list
The list object containing GenomicRanges objects.
clusters
a vector with cluster assignments for each item in fragment_list
Value
a lis of GenomicRanges objects with all members of each cluster downsampled to the
minimum number of reads of all cluster members.
AllenInstitute/lowcat documentation built on Oct. 30, 2019, 4:45 a.m.
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Description Usage Arguments Value
View source: R/io_and_formats.R
Description
Downsample fragments within cluster sets to match the sample with the lowest number of fragments
Usage
1 | balance_fragment_clusters(fragment_list, clusters)
|
Arguments
fragment_list |
The list object containing GenomicRanges objects. |
clusters |
a vector with cluster assignments for each item in fragment_list |
Value
a lis of GenomicRanges objects with all members of each cluster downsampled to the minimum number of reads of all cluster members.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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