filter_fragments: Filter a list of GenomicRanges objects against a single...
In AllenInstitute/lowcat: Low Coverage Accessibility and Transcriptomics
Description
Usage
Arguments
Value
View source: R/io_and_formats.R
Description
Filter a list of GenomicRanges objects against a single GenomicRanges object
Usage
1
2
filter_fragments(fragment_list, filter_GR, mode = "remove",
ignore_strand = TRUE)
Arguments
fragment_list
The list object containing GenomicRanges objects
filter_GR
The GenomicRanges object to use for filtering.
mode
Whether to "remove" or "keep" overlaps. Default is "remove"
ignore_strand
Logical, whether or not to ignore the strand of regions in the comparison
Value
A list object containing filtered GenomicRanges objects.
AllenInstitute/lowcat documentation built on Oct. 30, 2019, 4:45 a.m.
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Description Usage Arguments Value
View source: R/io_and_formats.R
Description
Filter a list of GenomicRanges objects against a single GenomicRanges object
Usage
1 2 | filter_fragments(fragment_list, filter_GR, mode = "remove",
ignore_strand = TRUE)
|
Arguments
fragment_list |
The list object containing GenomicRanges objects |
filter_GR |
The GenomicRanges object to use for filtering. |
mode |
Whether to "remove" or "keep" overlaps. Default is "remove" |
ignore_strand |
Logical, whether or not to ignore the strand of regions in the comparison |
Value
A list object containing filtered GenomicRanges objects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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