downsample_fragments: Equally downsample a list of GenomicRanges objects

In AllenInstitute/lowcat: Low Coverage Accessibility and Transcriptomics

Description

Equally downsample a list of GenomicRanges objects

Usage

downsample_fragments(fragment_list, downsample_n = 10000,
  discard_if_too_few = TRUE, seed = 42)

Arguments

fragment_list	The list object containing GenomicRanges objects
downsample_n	The number of fragments to retain. Default is 1e4.
discard_if_too_few	Logical to determine if samples with fewer than downsample_n regions should be discarded. If FALSE, samples with < downample_n regions will be retained without sampling. Default is TRUE.
seed	A seed value for sampling for reproducibility. Default is 42.

Value

A list object containing downsampled GenomicRanges objects.

AllenInstitute/lowcat documentation built on Oct. 30, 2019, 4:45 a.m.