region_fragment_count: Count the sum of overlaps for each member of a fragment list...
In AllenInstitute/lowcat: Low Coverage Accessibility and Transcriptomics
Description
Usage
Arguments
Value
View source: R/transcription_functions.R
Description
Count the sum of overlaps for each member of a fragment list in a set of regions
Usage
1
region_fragment_count(fragment_list, regions, name_col = "mcols.name")
Arguments
fragment_list
The list of GenomicRanges objects to compare to regions
regions
A single GenomicRanges object as targets
name_col
The column in regions that has the name of each region.
Value
A matrix with each fragment list as columns and each target region as rows containing
the counts of overlaps between each fragment list in each region.
AllenInstitute/lowcat documentation built on Oct. 30, 2019, 4:45 a.m.
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Description Usage Arguments Value
View source: R/transcription_functions.R
Description
Count the sum of overlaps for each member of a fragment list in a set of regions
Usage
1 | region_fragment_count(fragment_list, regions, name_col = "mcols.name")
|
Arguments
fragment_list |
The list of GenomicRanges objects to compare to regions |
regions |
A single GenomicRanges object as targets |
name_col |
The column in regions that has the name of each region. |
Value
A matrix with each fragment list as columns and each target region as rows containing the counts of overlaps between each fragment list in each region.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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