convert_fragment_list: Convert a list of fragments to cut sites or Tn5 footprints
In AllenInstitute/lowcat: Low Coverage Accessibility and Transcriptomics
Description
Usage
Arguments
Value
View source: R/plotting_functions.R
Description
Convert a list of fragments to cut sites or Tn5 footprints
Usage
1
convert_fragment_list(fragment_list, to = c("cuts", "footprints"))
Arguments
fragment_list
A list of GenomicRanges objects containing fragment regions
to
The type of regions to convert to. Can be "cuts", which are the 5' ends of each region, or "footprints",
which are the 19 bp footprint regions of the Tn5 transposase.
Value
A list of the same length of fragment_list, with objects converted to cuts or footprints.
AllenInstitute/lowcat documentation built on Oct. 30, 2019, 4:45 a.m.
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Description Usage Arguments Value
View source: R/plotting_functions.R
Description
Convert a list of fragments to cut sites or Tn5 footprints
Usage
1 | convert_fragment_list(fragment_list, to = c("cuts", "footprints"))
|
Arguments
fragment_list |
A list of GenomicRanges objects containing fragment regions |
to |
The type of regions to convert to. Can be "cuts", which are the 5' ends of each region, or "footprints", which are the 19 bp footprint regions of the Tn5 transposase. |
Value
A list of the same length of fragment_list, with objects converted to cuts or footprints.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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