overlap_jaccard_df: Compute jaccard similarity values based on GenomicRanges...

In AllenInstitute/lowcat: Low Coverage Accessibility and Transcriptomics

Description

This version returns a data.frame with extended stats for every comparison.

Usage

overlap_jaccard_df(fragment_list, n_cores = "auto",
  cluster_type = "PSOCK")

Arguments

fragment_list	The list object containing GenomicRanges objects.
n_cores	The number of cores to use in parallel. Use "auto" to detect and use all cores. Default is "auto".
cluster_type	Either "PSOCK" (for Windows) or "FORK" (possible on Linux and Mac). FORK is more memory-efficient.

Details

For a more streamlined version that returns only a matrix of distances, see ?overlap_jaccard_mat.

Value

a data.frame with results for overlap-based comparisons:

AllenInstitute/lowcat documentation built on Oct. 30, 2019, 4:45 a.m.