expand_fragments: Expand the boundaries of regions in a list of GenomicRanges...

In AllenInstitute/lowcat: Low Coverage Accessibility and Transcriptomics

Description

This function expands from the center of the GenomicRanges objects using GenomicRanges::resize(fix = "center")

Usage

expand_fragments(fragment_list, width = 10000, collapse = TRUE)

Arguments

fragment_list	The list object containing GenomicRanges objects
width	The fragment size to output. Default is 1e4.
collapse	Logical to determine if overlapping fragments should be merged after expansion. Default is TRUE.

Value

A list object containing resized GenomicRanges objects.

AllenInstitute/lowcat documentation built on Oct. 30, 2019, 4:45 a.m.