Files in AndersenLab/easyXpress
A Package to Read, Process, and Analyze Worm Data Generated from CellProfiler’s WormToolbox

.Rbuildignore
.github/.gitignore
.github/workflows/build_docker.yml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/Xpress.R R/checkBalance.R R/checkEff.R R/checkModels.R R/checkOF.R R/checkObjs.R R/checkWF.R R/classifierOF.R R/clusterOF.R R/data.R R/delta.R R/easyXpress-package.R R/edgeFlag.R R/edgeOF.R R/filterOF.R R/filterWF.R R/globals.R R/iqrOutlier.R R/makeDesign.R R/modelSelection.R R/nWF.R R/outlierOF.R R/outlierWF.R R/plateThumbs.R R/process.R R/readXpress.R R/regEff.R R/sdOutlier.R R/setFlags.R R/setOF.R R/setWF.R R/summarizeWells.R R/tidyImages.R R/tidyProject.R R/titerWF.R R/userOF.R R/userWF.R R/viewDose.R R/viewOverlay.R R/viewPlate.R R/viewWell.R R/wellThumbs.R README.md
_pkgdown.yml
data/gbm2x.rda
data/model_select_1.rda
data/model_select_2.rda
data/model_select_3.rda
data/model_select_4.rda
docs/404.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Dose_Response.html
docs/articles/Dose_Response_files/figure-html/unnamed-chunk-10-1.png
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docs/articles/Dose_Response_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Dose_Response_files/figure-html/unnamed-chunk-7-1.png
docs/articles/articles/Dose_Response.html
docs/articles/checkModels_ex_anno.png
docs/articles/easyXpress.html
docs/articles/easyXpress_files/crosstalk-1.2.0/css/crosstalk.min.css
docs/articles/easyXpress_files/crosstalk-1.2.0/js/crosstalk.js
docs/articles/easyXpress_files/crosstalk-1.2.0/js/crosstalk.js.map
docs/articles/easyXpress_files/crosstalk-1.2.0/js/crosstalk.min.js
docs/articles/easyXpress_files/crosstalk-1.2.0/js/crosstalk.min.js.map
docs/articles/easyXpress_files/crosstalk-1.2.0/scss/crosstalk.scss
docs/articles/easyXpress_files/figure-html/unnamed-chunk-13-1.png
docs/articles/easyXpress_files/figure-html/unnamed-chunk-15-1.png
docs/articles/easyXpress_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/easyXpress_files/plotly-binding-4.10.0/plotly.js
docs/articles/easyXpress_files/plotly-htmlwidgets-css-2.5.1/plotly-htmlwidgets.css
docs/articles/easyXpress_files/plotly-main-2.5.1/plotly-latest.min.js
docs/articles/easyXpress_files/typedarray-0.1/typedarray.min.js
docs/articles/index.html
docs/articles/viewOverlay.png
docs/authors.html
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Xpress.html
docs/reference/checkBalance.html
docs/reference/checkEff.html
docs/reference/checkModels.html
docs/reference/checkOF.html
docs/reference/checkObjs.html
docs/reference/checkWF.html
docs/reference/classifierOF.html
docs/reference/clusterOF.html
docs/reference/delta.html
docs/reference/easyXpress-package.html
docs/reference/edgeFlag.html
docs/reference/edgeOF.html
docs/reference/figures/Overview.png
docs/reference/figures/logo.png
docs/reference/filterOF.html
docs/reference/filterWF.html
docs/reference/gbm2x.html
docs/reference/index.html
docs/reference/iqrOutlier.html
docs/reference/makeDesign.html
docs/reference/modelSelection.html
docs/reference/model_select_1.html
docs/reference/model_select_2.html
docs/reference/model_select_3.html
docs/reference/model_select_4.html
docs/reference/nWF.html
docs/reference/outlierOF.html
docs/reference/outlierWF.html
docs/reference/plateThumbs.html
docs/reference/process.html
docs/reference/readXpress.html
docs/reference/regEff.html
docs/reference/sdOutlier.html
docs/reference/setFlags.html
docs/reference/setOF.html
docs/reference/setWF.html
docs/reference/summarizeWells.html
docs/reference/tidyImages.html
docs/reference/tidyProject.html
docs/reference/titerWF.html
docs/reference/userOF.html
docs/reference/userWF.html
docs/reference/viewDose.html
docs/reference/viewOverlay.html
docs/reference/viewPlate.html
docs/reference/viewWell.html
docs/reference/wellThumbs.html
docs/search.json
docs/sitemap.xml
easyXpress.Rproj
env/.Rprofile
env/Dockerfile
env/rstudio-prefs.json
man/Xpress.Rd man/checkBalance.Rd man/checkEff.Rd man/checkModels.Rd man/checkOF.Rd man/checkObjs.Rd man/checkWF.Rd man/classifierOF.Rd man/clusterOF.Rd man/delta.Rd man/easyXpress-package.Rd man/edgeFlag.Rd man/edgeOF.Rd
man/figures/Overview.png
man/figures/logo.png
man/filterOF.Rd man/filterWF.Rd man/gbm2x.Rd man/iqrOutlier.Rd man/makeDesign.Rd man/modelSelection.Rd man/model_select_1.Rd man/model_select_2.Rd man/model_select_3.Rd man/model_select_4.Rd man/nWF.Rd man/outlierOF.Rd man/outlierWF.Rd man/plateThumbs.Rd man/process.Rd man/readXpress.Rd man/regEff.Rd man/sdOutlier.Rd man/setFlags.Rd man/setOF.Rd man/setWF.Rd man/summarizeWells.Rd man/tidyImages.Rd man/tidyProject.Rd man/titerWF.Rd man/userOF.Rd man/userWF.Rd man/viewDose.Rd man/viewOverlay.Rd man/viewPlate.Rd man/viewWell.Rd man/wellThumbs.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/.gitignore
vignettes/articles/.Rmd vignettes/articles/Dose_Response.Rmd
vignettes/articles/checkModels_ex_anno.png
vignettes/articles/viewOverlay.png
vignettes/easyXpress.R vignettes/easyXpress.Rmd
vignettes/easyXpress.html
vignettes/example_data/ProcessedImages/20191119-growth-p05-m2X_C03_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p06-m2X_C09_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p09-m2X_C06_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p11-m2X_C03_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p13-m2X_C08_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p22-m2X_C07_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p25-m2X_C04_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p28-m2X_C01_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p32-m2X_C05_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p35-m2X_C04_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p39-m2X_C09_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p41-m2X_C01_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p45-m2X_C11_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p46-m2X_C01_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p48-m2X_C03_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p50-m2X_C02_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p55-m2X_C05_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p57-m2X_C07_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p61-m2X_C02_overlay.png
vignettes/example_data/ProcessedImages/20191119-growth-p63-m2X_C03_overlay.png
vignettes/example_data/ProcessedImages/20200711-toxin09A-p13-m2X_G01_overlay.png
vignettes/example_data/ProcessedImages/20200711-toxin09A-p13-m2X_G03_overlay.png
vignettes/example_data/ProcessedImages/20200711-toxin09A-p13-m2X_G05_overlay.png
vignettes/example_data/ProcessedImages/20200711-toxin09A-p13-m2X_G07_overlay.png
vignettes/example_data/ProcessedImages/20200711-toxin09A-p13-m2X_G09_overlay.png
vignettes/example_data/ProcessedImages/20200711-toxin09A-p13-m2X_G11_overlay.png
vignettes/example_data/cp_data/CellProfiler-Analysis_20191119_example_data.RData
vignettes/example_data/cp_data/processed_dose_data.RData
vignettes/example_data/cp_data/processed_plate_data.RData
AndersenLab/easyXpress documentation built on Dec. 6, 2024, 4:04 a.m.