plateThumbs: plateThumbs

In AndersenLab/easyXpress: A Package to Read, Process, and Analyze Worm Data Generated from CellProfiler’s WormToolbox

plateThumbs

Description

Make a full 96-well plate image in .png format from well thumbnail images.

Usage

plateThumbs(project_dir, plates = "all")

Arguments

project_dir	The full path to the project directory. It must contain the raw_image_thumbs folder holding .png thumbnail images of wells. The wellThumbs function can be used to generate the raw_image_thumbs folder and .png thumbnails from raw .TIFs.
plates	a vector with plate numbers to make thumbs for. This vector is used to match plate patterns in the filelist. "all" will make thumbs for all plates. 13:72 will make thumbs for wells plates p13 - p72. c(1, 3, 106) will make thumbs for plates p01, p03, and p106.

Value

A folder named raw_plate_thumbs under the project directory containing individual .png files for each plate.

AndersenLab/easyXpress documentation built on Dec. 6, 2024, 4:04 a.m.