tidyProject | R Documentation |
Tidies up .TIF files exported from imaging platform and makes thumbnails of wells and plates.
tidyProject(project_dir, rm_other = FALSE, plates = "all", max_dim = 512)
project_dir |
the full path to the project directory. This folder should contain .TIF images exported from the imaging platform. |
rm_other |
logical, remove non-TIF files and folders after the .TIF
files are moved to raw_images subfolder? Default is |
plates |
a vector with plate numbers to make thumbs for. This vector is
used to match plate patterns in the filelist. |
max_dim |
The maximum dimension of the resized images in pixels. The default value is 512, which scales a 2048 pixel image to 6.25 percent of its original resolution. |
Folders named raw_images, raw_image_thumbs, and raw_plate_thumbs are
created under the directory specified by project_dir
. These folders
match the directory structure needed to process the images with
AndersenLab/CellProfiler.
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