viewOverlay | R Documentation |
viewOverlay
viewOverlay(
data,
proc.img.dir,
well.label,
obj.label,
obj.color = NULL,
obj.col.pal = NULL,
obj.shape = NULL,
obj.shape.pal = NULL,
text.anno = NULL,
file = NULL
)
data |
A data frame output from |
proc.img.dir |
A variable name in |
well.label |
A variable name in |
obj.label |
A variable name in |
obj.color |
Optional: A variable name in |
obj.col.pal |
Optional: A color palette for obj.labels. This is a vector of colors with names for each unique value in |
obj.shape |
Optional: A variable name in |
obj.shape.pal |
Optional: A shape palette for objects. This is a vector of shape values with names for each unique value in |
text.anno |
Optional: a variable name in |
file |
Optional: The full path for saving output plot. Default is NULL which will just return the ggplot2 plot. |
A plot showing all the CellProfiler processed well overlays in data
with objects annotated as desired.
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