wellThumbs: wellThumbs
In AndersenLab/easyXpress: A Package to Read, Process, and Analyze Worm Data Generated from CellProfiler’s WormToolbox
wellThumbs R Documentation
wellThumbs
Description
Make .png thumbnails from .TIF files in the raw_images directory. Making
thumbs from .TIFs requires ImageMagick to be
installed on your system. To install imagemagick with Homebrew, enter:
brew install imagemagick
into the terminal.
Usage
wellThumbs(project_dir, plates = "all", max_dim = 512)
Arguments
project_dir
The full path to the project directory containing the
raw_images subdirectory.
plates
a vector with plate numbers to make thumbs for. This vector is
used to match plate patterns in the filelist.
"all" will make
thumbs for wells in all plates.
13:72 will make thumbs for wells
in plates p13 - p72.
c(1, 3, 106) will make thumbs for wells in
plates p01, p03, and p106.
max_dim
The maximum dimension of the resized images in pixels. The
default value is 512, which scales a 2048 pixel image to 6.25 percent of its
original resolution.
Value
A folder named raw_image_thumbs under the directory specified by
project_dir.
AndersenLab/easyXpress documentation built on Dec. 6, 2024, 4:04 a.m.
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| wellThumbs | R Documentation |
wellThumbs
Description
Make .png thumbnails from .TIF files in the raw_images directory. Making
thumbs from .TIFs requires ImageMagick to be
installed on your system. To install imagemagick with Homebrew, enter:
brew install imagemagick
into the terminal.
Usage
wellThumbs(project_dir, plates = "all", max_dim = 512)
Arguments
project_dir |
The full path to the project directory containing the raw_images subdirectory. |
plates |
a vector with plate numbers to make thumbs for. This vector is
used to match plate patterns in the filelist. |
max_dim |
The maximum dimension of the resized images in pixels. The default value is 512, which scales a 2048 pixel image to 6.25 percent of its original resolution. |
Value
A folder named raw_image_thumbs under the directory specified by
project_dir.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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