checkModels | R Documentation |
This function will create an one or more arrays of image overlays to help users evaluate cellprofiler model performance and object length thresholds.
checkModels(
data,
...,
modelName = "MDHD",
OF = "filter",
length_thresh = 164.685,
strainN = 4,
wellN = 4,
proc.img.dir,
well.label,
out.dir
)
data |
A data frame output from the |
... |
<['dynamic-dots'][rlang::dyn-dots]> Variable(s) used to group data. Variable names in data are supplied separated by commas and without quotes.
For example |
modelName |
The name of the cellprofiler model to check in the diagnostic plots. Typically this is the smallest model in the dataset.
The default is set to |
OF |
Select one of |
length_thresh |
An object length threshold in um used to label objects from the data. The default setting is |
strainN |
The maximum number of strains to include in a overlay. This function will return at maximum |
wellN |
The maximum number of wells to include in a overlay. This function will return at maximum |
proc.img.dir |
Supply one of two options. 1: The full path to a directory holding all processed images. For example, "~/proc_images/".
2: A variable name in |
well.label |
A variable name in |
out.dir |
The full path to an existing directory that will be used to hold the overlays. |
A dataframe nested by the grouping variables with or without flagged objects removed.
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