Xpress | R Documentation |
This is a wrapper function that will run all functions in the package and output a processed dataframe.
Xpress(
filedir,
rdafile,
...,
design = FALSE,
radius = 825,
center_x = 1024,
center_y = 1024,
cluster_flag = TRUE,
well_edge_flag = TRUE
)
filedir |
The project directory or directories with CellProfiler data.
Provide a full path to the directory or a vector of project directory paths.
Each directory must have a |
rdafile |
The specific .rda file name in the |
... |
specify variable used to summarize data. Variable names can be listed in succession. |
design |
Logical parameter, if TRUE then a design file will be joined to data. The design file should be located in a sub-folder of the filedir named design. If FALSE no design file will be joined. |
radius |
Radius in pixels away from image center with even illumination. |
center_x |
center x position of image |
center_y |
center y position of image |
cluster_flag |
Logical parameter; do you want worm objects in a cluster to be excluded when calculating well outliers? We recommend TRUE as the default. |
well_edge_flag |
Logical parameter; do you want worm objects in close proximity to the well edge to be excluded when calculating well outliers? We recommend TRUE as the default. |
List with four elements: raw data, processed data, and summaries for both datasets.
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