checkEff: checkEff

In AndersenLab/easyXpress: A Package to Read, Process, and Analyze Worm Data Generated from CellProfiler’s WormToolbox

checkEff

Description

A function to visualize experimental effects and detect potential issues in the data.

Usage

checkEff(data, ..., x, y, fill = NULL, size = 1.5, scales = "fixed")

Arguments

data	A data frame output from any easyXpress function used after the modelSelection function.
...	<[rlang::'dyn-dots']> Variable(s) used to facet the data in the output plot. Variable names can be listed in succession.
x	The independent variable to use as the x-axis of the plot. For example, strain. No quotes are needed.
y	The dependent variable to use as the y-zxis of the plot. For example, median_wormlength_um. No quotes are needed.
fill	The variable used to fill data points.
size	The size of the points plotted with ggplot2::geom_jitter. The default is 1.5.
scales	How to plot axes for facets. Should scales be fixed ("fixed", the default), free ("free"), or free in one dimension ("free_x", "free_y")?

Value

A box plot of the data with points jittered behind. The plot is faceted by any variables supplied with ...,

AndersenLab/easyXpress documentation built on Dec. 6, 2024, 4:04 a.m.