tx_get_flankSequence: Get flanking sequences
In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions
tx_get_flankSequence R Documentation
Get flanking sequences
Description
Get flanking sequences
Usage
tx_get_flankSequence(DT, logi_col, upFlank, doFlank, addNames = FALSE)
Arguments
DT
data.table. A table as output by the tx_makeDT_coverage(),
tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
logi_col
character. Name of column of logical class, which indicates queried sites
upFlank
numeric. Up-stream flank length
doFlank
numeric. Down-stream flank length
addNames
logical. Set to TRUE to add names for each sequence in format
"gene:txcoor". Default is FALSE.
Value
character
AngelCampos/txtools documentation built on Sept. 16, 2024, 10:25 p.m.
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| tx_get_flankSequence | R Documentation |
Get flanking sequences
Description
Get flanking sequences
Usage
tx_get_flankSequence(DT, logi_col, upFlank, doFlank, addNames = FALSE)
Arguments
DT |
data.table. A table as output by the |
logi_col |
character. Name of column of logical class, which indicates queried sites |
upFlank |
numeric. Up-stream flank length |
doFlank |
numeric. Down-stream flank length |
addNames |
logical. Set to TRUE to add names for each sequence in format "gene:txcoor". Default is FALSE. |
Value
character
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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