tx_get_metageneExons: Get metagene by exons

In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions

Get metagene by exons

Description

Get metagene by exons

Usage

tx_get_metageneExons(
  txDT,
  colVars,
  nBins,
  geneAnnot = NULL,
  rm_NArows = TRUE,
  nCores = 1
)

Arguments

txDT	data.table. A table as output by the tx_makeDT_coverage(), tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
colVars	character. Names of columns for which values will be extracted
nBins	integer. Number of bins into which exon data will be allocated.
geneAnnot	GRanges. Gene annotation as loaded by tx_load_bed().
rm_NArows	logical. Remove rows of final matrix which consist of all NA values.
nCores	integer. Number of cores to run the function with. Multicore capability not available in Windows OS.

Value

list of matrices for each colVar

AngelCampos/txtools documentation built on Sept. 16, 2024, 10:25 p.m.