tx_plot_ggseqlogo: Plot motif centered in logical annotation

In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions

Plot motif centered in logical annotation

Description

Plots a motif of the sequence surrounding sites marked as TRUE in a logical vector in a

Usage

tx_plot_ggseqlogo(DT, logi_col, upFlank, doFlank, method = "bits")

Arguments

DT	data.table. A table as output by the tx_makeDT_coverage(), tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
logi_col	character. Name of column of logical class, which indicates queried sites
upFlank	numeric. Up-stream flank length
doFlank	numeric. Down-stream flank length
method	character. Height method, can be either "bits" or "probability". Default = "bits".

Value

ggplot

AngelCampos/txtools documentation built on Sept. 16, 2024, 10:25 p.m.