tx_plot_nucFreq: Nucleotide frequency plot

In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions

Nucleotide frequency plot

Description

Generates a ggplot barplot using the nucleotide frequency counts in data.tables generated by tx_covNucFreqDT().

Usage

tx_plot_nucFreq(
  DT,
  gene,
  txRange = 1:nrow(DT),
  removeInsert = TRUE,
  show_yLabels = TRUE,
  bar_border = TRUE,
  showLegend = TRUE
)

Arguments

DT	data.table. Input data from which to generate the plot
gene	character. Name of the gene in DT which wants to be plotted.
txRange	integer. Range in data to be used, 'txcoor' column is used to delimit this range in the data.table.
removeInsert	logical. Removes counts from insert reads, which do not call for a nucleotide, are just the gap between read1 and read2.
show_yLabels	logical. If set to FALSE hides the y axis labels.
bar_border	logical. If set to FALSE removes the border of the bars.
showLegend	logical. If set to FALSE does not renger a legend.

Value

ggplot

AngelCampos/txtools documentation built on Sept. 16, 2024, 10:25 p.m.