tx_plot_staEndCov: Transcript coverage plot highlighting read-starts and...

In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions

Transcript coverage plot highlighting read-starts and read-ends counts

Description

Transcript coverage plot highlighting read-starts and read-ends counts

Usage

tx_plot_staEndCov(
  DT,
  gene,
  txRange = 1:nrow(DT),
  removeCov = FALSE,
  show_yLabels = TRUE,
  bar_border = TRUE,
  showLegend = TRUE
)

Arguments

DT	data.table. A table as output by the tx_makeDT_coverage(), tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
gene	character. Name of the gene in DT which wants to be plotted.
txRange	integer. Range in data to be used, 'txcoor' column is used to delimit this range in the data.table.
removeCov	logical. If set to TRUE remove coverage counts.
show_yLabels	logical. If set to FALSE hides the y axis labels.
bar_border	logical. If set to FALSE removes the border of the bars.
showLegend	logical. If set to FALSE does not renger a legend.

Value

ggplot

AngelCampos/txtools documentation built on April 8, 2024, 6:06 p.m.