tx_test_ttest: t-test in txDT list

In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions

t-test in txDT list

Description

Apply a t-test per nucleotide position separating by groups over a txDT list. At least 2 samples in each group are needed.

Usage

tx_test_ttest(DTL, cont_var, test_groups, test_na.rm = FALSE, ...)

Arguments

DTL	list. List of txDT, into which each element represents a replicate of an experimental dataset.
cont_var	character. Name of column, specifying the continuous variable to be used in test.
test_groups	factor. Factor specifying the "WT" and "KO" samples.
test_na.rm	logical. Remove NAs from tests
...	For use by rowttests

Value

data.table

AngelCampos/txtools documentation built on Sept. 16, 2024, 10:25 p.m.