Files in BIGslu/kimma
Kinship In Mixed Model Analysis of RNA-seq
.Rbuildignore
.Rprofile
.github/.gitignore
.github/workflows/check-standard.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/example.count.R
R/example.dat.R
R/example.kin.R
R/example.seasnake.R
R/example.voom.R
R/extract_lmFit.R
R/kimma_cleaning.R
R/kimma_lm.R
R/kimma_lme.R
R/kimma_lmerel.R
R/kmFit.R
R/kmFit_contrast.R
R/kmFit_eQTL.R
R/summarise_kmFit.R
R/utils-pipe.R
README.md
data-raw/DATASET.R
data-raw/P259_pDC_clean.RData
data-raw/P259_pDC_counts.csv
data-raw/combined_feature_counts.tsv
data-raw/combined_flagstat.tsv
data-raw/combined_picard.tsv
data-raw/kmFit_defaults.RData
data-raw/patient_meta.csv
data-raw/sample_meta.csv
data/example.count.rda
data/example.dat.rda
data/example.kin.rda
data/example.seasnake.rda
data/example.voom.rda
inst/CITATION
kimma.Rproj
man/example.count.Rd
man/example.dat.Rd
man/example.kin.Rd
man/example.seasnake.Rd
man/example.voom.Rd
man/extract_lmFit.Rd
man/kimma_cleaning.Rd
man/kimma_lm.Rd
man/kimma_lme.Rd
man/kimma_lmerel.Rd
man/kmFit.Rd
man/kmFit_contrast.Rd
man/kmFit_eQTL.Rd
man/pipe.Rd
man/summarise_kmFit.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.json
tests/testthat.R
tests/testthat/test-kimma_lm.R
tests/testthat/test-kimma_lme.R
tests/testthat/test-kimma_lmerel.R
tests/testthat/test-kmFit_contrast.R
tests/testthat/test_data/to_model_ls.Rds
