API for BMILAB/movAPA
movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation
| Global functions | |
|---|---|
| .asDf | Source code |
| .autoDetectCommonString | Source code |
| .filterMovResRowID | Source code |
| .getPAbyGeneFromMovUTRTrendRes | Source code |
| .getStatsFromResList | Source code |
| .isAnyMatrix | Source code |
| .isSparse | Source code |
| .removeCommonStr | Source code |
| .saveMtx2File | Source code |
| AinB | Source code |
| LOG | Source code |
| PACdataset | Man page |
| PACdataset-class | Man page |
| PACds | Man page |
| add_rna | Source code |
| add_utr | Source code |
| annotateByKnownPAC | Man page |
| annotateByPAS | Man page |
| annotatePAC | Man page |
| asAnyMatrix | Man page Source code |
| buildRefPACdsAnno | Man page |
| countOvpPACds | Man page |
| createPACdataset | Man page |
| demo_peaks | Man page |
| ext3UTRPACds | Man page |
| faFromPACds | Man page |
| findOvpPACds | Man page |
| geneStatForPACds | Source code |
| get3UTRAPAds | Man page Source code |
| get3UTRAPApd | Man page Source code |
| getNearbyPAdist | Man page Source code |
| getNonItgFtrId | Source code |
| getVarGrams | Man page |
| gtfToDtExon | Source code |
| heatmapResults | Man page |
| heatmapResults-class | Man page |
| is3UTRAPAds | Source code |
| isAppropriateColorLabels | Source code |
| isChrConsistent | Source code |
| kcount | Man page |
| length | Man page |
| makeColorLabels | Source code |
| makeExamplePACds | Man page Source code |
| mergePACds | Man page |
| mergePACds_v0 | Man page |
| movAPA | Man page |
| movAPA-package | Man page |
| movAPASwitchRes-class | Man page |
| movAPAindex | Man page |
| movAPAindexDiff | Man page |
| movAPAswitch | Man page |
| movDEGene | Man page |
| movDEGeneRes-class | Man page |
| movDEPAC | Man page |
| movDEPACRes-class | Man page |
| movIndexDiffRes-class | Man page |
| movPAindex | Man page |
| movRes-class | Man page |
| movRes2heatmapResults | Man page |
| movRes2heatmapResults,movRes-method | Man page |
| movSelect | Man page |
| movSelect,movAPASwitchRes-method | Man page |
| movSelect,movDEGeneRes-method | Man page |
| movSelect,movDEPACRes-method | Man page |
| movSelect,movIndexDiffRes-method | Man page |
| movSelect,movUTRTrendRes-method | Man page |
| movStat | Man page |
| movStat,PACdataset-method | Man page |
| movStat,movRes-method | Man page |
| movUTRTrendRes-class | Man page |
| movUTRtrend | Man page |
| movViz | Man page |
| movViz,PACdataset-method | Man page |
| movViz,movAPASwitchRes-method | Man page |
| movViz,movDEGeneRes-method | Man page |
| movViz,movDEPACRes-method | Man page |
| movViz,movRes-method | Man page |
| movViz,movUTRTrendRes-method | Man page |
| movVizSC | Man page Source code |
| normalizePACds | Man page |
| orderWithinGroups | Source code |
| outputHeatStat | Man page |
| parseGenomeAnnotation | Man page Source code |
| parseGff | Man page Source code |
| parseTxdb | Man page |
| plotATCGforFAfile | Man page |
| plotAxisTrack | Source code |
| plotColorKey | Source code |
| plotColorLabel | Source code |
| plotCummPAindex | Man page |
| plotGeneAnnotation | Source code |
| plotGeneModels | Source code |
| plotGeneModels2 | Source code |
| plotGroupLabel | Source code |
| plotHeatmap | Man page |
| plotHeatmapSC | Source code |
| plotPACdsStat | Man page Source code |
| plotRatio | Source code |
| plotRatioPACount | Source code |
| plotScHeatmap | Source code |
| plotSeqLogo | Man page |
| plotSum | Source code |
| plotSumPACount | Source code |
| plotYvalue | Source code |
| rbind | Man page |
| rbind.PACds | Source code |
| readDESeqDs | Man page |
| readPACds | Man page |
| removePACdsIP | Man page |
| runDiffusionMap | Source code |
| samplePACds | Man page Source code |
| scPACds | Man page |
| subscript_operator | Man page |
| subsetHeatmap | Man page |
| subsetPACds | Man page Source code |
| summary | Man page |
| testExt3UTR | Man page |
| writePACds | Man page |
