Files in Bankso/SCAR

SpLiT-ChEC analysis with R

R/SCAR_obj.R R/annotate_peaks.R R/bam_managment.R R/bed_managment.R R/bg_managment.R R/bowtie_alignment.R R/call_peaks_SEACR.r R/compare_cov.R R/coverage_managment.r R/find_peaks_macs.R R/make_bgs.R R/make_matrix.R R/make_tracks.R R/make_tracks_opts.R R/matrix_managment.R R/message_functions.R R/ovbed_management.R R/pf_analysis.R R/plot_heatmap.R R/plot_profile.R R/quality_control.R R/setting_handler.R README.md man/SCAR_maker.Rd man/SCAR_obj-class.Rd man/add_bams.Rd man/add_beds.Rd man/add_bgs.Rd man/add_cov.Rd man/add_matrix.Rd man/add_ovbed.Rd man/annotate_peaks.Rd man/bowtie2_align.Rd man/bowtie2_index.Rd man/call_peaks_SEACR.Rd man/call_peaks_macs.Rd man/compare_bws.Rd man/fastqc.Rd man/make_bgs.Rd man/make_matrix.Rd man/make_tracks.Rd man/make_tracks_opts.Rd man/pf_analysis.Rd man/plot_heatmap.Rd man/plot_profile.Rd man/print_message.Rd man/pull_setting.Rd man/set_settings.Rd script_examples/process/options.R