plot_heatmap: Plot matrix output as heatmap

In Bankso/SCAR: SpLiT-ChEC analysis with R

Plot matrix output as heatmap

Description

Plot matrix output as heatmap

Usage

plot_heatmap(
  SCAR_obj,
  outdir = getwd(),
  matrix = NA,
  plot_name = NA,
  plot_opts = NA,
  clust = NA
)

Arguments

SCAR_obj	SCAR object.
outdir	Output directory.
matrix	If desired, provide a matrix for processing; by default, the stored matrix is used
plot_name	name for plot with extension (.pdf or .png)
plot_opts	A list of input strings to be converted to a bash command for the plot function
clust	If given, data will be clustered into the number of groups equal to the value entered (integers only) via hclust

Bankso/SCAR documentation built on Aug. 20, 2022, 5:26 a.m.