call_peaks_SEACR: Peak Calling

In Bankso/SCAR: SpLiT-ChEC analysis with R

Peak Calling

Description

Peak Calling

Usage

call_peaks_SEACR(
  SCAR_obj,
  outdir = getwd(),
  num_thresh = NA,
  norm = NA,
  stringent = NA,
  sep = ""
)

Arguments

SCAR_obj	SCAR object.
outdir	Output directory for peak files.
num_thresh	P-value thresholding for peaks.
norm	TRUE or FALSE - inputs are normalized or not
stringent	TRUE or FALSE - stringent or relaxed analysis
sep	separator for entries, default here is ""

Bankso/SCAR documentation built on Aug. 20, 2022, 5:26 a.m.