SCAR_maker: SCAR Object Constructor Function

In Bankso/SCAR: SpLiT-ChEC analysis with R

SCAR Object Constructor Function

Description

SCAR Object Constructor Function

Usage

SCAR_maker(
  analysis_type,
  sample_sheet,
  sep = "\t",
  paired = NA,
  ncores = NA,
  compare = NA,
  comp_op = NA
)

Arguments

analysis_type	One of 'ChIP-seq', 'ChEC-seq', or 'SChEC-seq'.
sample_sheet	Either a data.frame or delimited file.
sep	If the sample sheet is a file, this specifies the delimiter.
paired	Whether the run is paired (TRUE) or unpaired (FALSE)
ncores	The number of cores/threads to use.
compare	TRUE/FALSE perform bamCompare instead of Coverage
comp_op	Single operation for comparison of coverage

Value

A SCAR object.

Bankso/SCAR documentation built on Aug. 20, 2022, 5:26 a.m.