make_bgs: Make bedgraphs
In Bankso/SCAR: SpLiT-ChEC analysis with R
make_bgs R Documentation
Make bedgraphs
Description
Make bedgraphs
Usage
make_bgs(
SCAR_obj,
outdir = getwd(),
pair_lr = FALSE,
frag_size = FALSE,
chrom_file = chrom_file
)
Arguments
SCAR_obj
SCAR object.
outdir
Output directory.
pair_lr
TRUE or FALSE, calculate coverage as number of
frags covering each bp (paired)
frag_size
Use stated fragment size from pairs instead
of read length (paired)
chrom_file
bedtools genome file path
Bankso/SCAR documentation built on Aug. 20, 2022, 5:26 a.m.
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| make_bgs | R Documentation |
Make bedgraphs
Description
Make bedgraphs
Usage
make_bgs( SCAR_obj, outdir = getwd(), pair_lr = FALSE, frag_size = FALSE, chrom_file = chrom_file )
Arguments
SCAR_obj |
SCAR object. |
outdir |
Output directory. |
pair_lr |
TRUE or FALSE, calculate coverage as number of frags covering each bp (paired) |
frag_size |
Use stated fragment size from pairs instead of read length (paired) |
chrom_file |
bedtools genome file path |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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