make_matrix: Convert coverage file to matrix

In Bankso/SCAR: SpLiT-ChEC analysis with R

Convert coverage file to matrix

Description

Convert coverage file to matrix

Usage

make_matrix(
  SCAR_obj,
  outdir = getwd(),
  primary = "reference-point",
  s_n_c = NA,
  in_str = NA,
  regions = NA,
  peak_type = NA
)

Arguments

SCAR_obj	SCAR object.
outdir	Output directory.'
primary	Main command; either 'reference-point' or 'scale-regions'
s_n_c	If desired, select a stored bigWig set for processing; "s" for sample, "n" for control, "c" for compare
in_str	A list of input strings to be converted to a bash command for computeMatrix
regions	A bed file defining regions to be plotted; if none entered, the peak file from peak finding will be used
peak_type	Peak finder used to make input peaks, 'macs' or 'seacr'

Bankso/SCAR documentation built on Aug. 20, 2022, 5:26 a.m.