plot_profile: Plot matrix output in profile
In Bankso/SCAR: SpLiT-ChEC analysis with R

plot_profile

R Documentation

Plot matrix output in profile

Plot matrix output in profile

plot_profile(
  SCAR_obj,
  outdir = getwd(),
  matrix = NA,
  plot_name = NA,
  plot_opts = NA,
  clust = NA
)

`SCAR_obj`	SCAR object.
`outdir`	Output directory.
`matrix`	If desired, provide a matrix for processing; by default, the stored matrix is used
`plot_name`	name for plot with extension (.pdf or .png)
`plot_opts`	A list of input strings to be converted to a bash command for the plot function
`clust`	If given, data will be clustered into the number of groups equal to the value entered (integers only) via hclust